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Publications

2010

Journal articles, publications in peer-reviewed conferences and workshops

  • Claudia d'Amato, Nicola Fanizzi, Marko Grobelnik, Agnieszka Lawrynowicz, Vojtech Svatek (eds.). Proc. of the 2nd ESWC Workshop on Inductive Reasoning and Machine Learning for the Semantic Web (IRMLeS 2010). Heraklion, Greece.

  • Julien Boccard, Alexandros Kalousis, Melanie Hilario, et al. Standard Machine Learning Algorithms Applied to UPLC-TOF/MS Metabolic Fingerprinting for the Discovery of Wound Biomarkers in Arabidopsis thaliana. Chemometrics and Intelligent Laboratory Systems, Elsevier, 2010.

  • Pavel Brazdil, Abraham Bernstein, Jörg-Uwe Kietz (eds.). Proc. of the 3rd Planning to Learn Workshop (WS9) at ECAI 2010.

  • A. Chatziioannou , I. Kanaris, C. Doukas, Ilias Maglogiannis. Using Grid Infrastructure for the Promotion of Biomedical Knowledge Mining. In: Proceedings of the 12th Mediterranean Conference on Medical and Biological Engineering and Computing. MEDICON 2010, May 27-30, 2010, Chalkidiki, Greece.

  • A. Chatziioannou, I. Kanaris,  C. Doukas, Y. Thermou, I. Maglogiannis. Enabling distributed Processing and Management of biological Data using the Grid and Web Technologies. 8th HealthGrid 2010 Conference, June 28-30, 2010, Paris, France, Stud Health Technol Inform. 2010;159:249-54

  • C. Doukas, Ilias Maglogiannis, A. Chatziioannou. A Scientific Gateway for Distributed Mining of Biomedical Image Data utilizing Web Services. In: Proceedings of the 5th EGEE User Forum, 2010 Conference, April 12-16, 2010, Upsalla, Sweden.

  • Charalampos Doukas, Theodosis Goudas, Simon Fischer, Ingo Mierswa, Aristotle Chatziioannou and Ilias Maglogiannis. An Open Data Mining Framework for the Analysis of Medical Images: Application on Obstructive Nephropathy Microscopy Images. In: Proc. of the 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2010. To appear.

  • T. Goudas, C. Doukas, Ilias Maglogiannis, A. Chatziioannou. Salient Regions Detection in Microscopic Kidney Biopsies Utilizing Image Analysis Techniques. In: Proceedings of the 12th Mediterranean Conference on Medical and Biological Engineering and Computing– MEDICON 2010, May 27-30, 2010, Chalkidiki, Greece.

  • Simon Jupp, Julie Klein, Joost Schanstra and Robert Stevens. Developing a Kidney and Urinary Pathway Knowledge Base. Bio-ontologies 2010, Boston, USA.

  • Jörg-Uwe Kietz, Floarea Serban and Abraham Bernstein. eProPlan: A Tool to Model Automatic Generation of Data Mining Workflows  In: Pavel Brazdil, Abraham Bernstein, Jörg-Uwe Kietz (eds.): Proc. of the 3rd Planning to Learn Workshop (WS9) at ECAI 2010.

  • Jörg-Uwe Kietz, Floarea Serban, Abraham Bernstein and Simon Fischer. Data Mining Workflow Templates for Intelligent Discovery Assistance and Auto-Experimentation. In: Proc. of the ECML/PKDD-10 Workshop on Third Generation Data Mining: Towards Service-Oriented Knowledge Discovery (SoKD-10).

  • Floarea Serban, Jörg-Uwe Kietz and Abraham Bernstein. An Overview of Intelligent Data Assistants for Data Analysis  In: Pavel Brazdil, Abraham Bernstein, Jörg-Uwe Kietz (eds.): Proc. of the 3rd Planning to Learn Workshop (WS9) at ECAI 2010.

  • Derry Tanti Wijaya, Alexandros Kalousis, Melanie Hilario. Predicting Classifier Performance Using Data Set Descriptors and Data Mining Ontology. Proc. of the 3rd Planning to Learn Workshop, ECAI 2010.

  • Adam Woznica, Alexandros Kalousis. A New Framework for Dissimilarity and Similarity Learning. Advances in Knowledge Discovery and Data Mining, 14th Pacific-Asia Conference, PAKDD 2010, Hyderabad, India, June 21-24, 2010. Springer.

  • Adam Woznica, Alexandros Kalousis, Melanie Hilario. Adaptive Matching Based Kernels for Labelled Graphs. Advances in Knowledge Discovery and Data Mining, 14th Pacific-Asia Conference, PAKDD 2010, Hyderabad, India, June 21-24, 2010. Springer.

Invited talks, posters and demos, project presentations

  • Abraham Bernstein, Melanie Hilario, Jörg-Uwe Kietz. e-LICO: An e-Laboratory for Interdisciplinary Collaborative Research in Data Mining and Data-Intensive Sciences. "News from the Front" Session, Extended Semantic Web Conference (ESWC-10), Heraklion, Greece, June 2010.

  • Melanie Hilario. Optimizing the Knowledge Discovery Process through Semantic Meta-Mining (Invited talk). In  Proc. of the 2nd ESWC Workshop on Inductive Reasoning and Machine Learning for the Semantic Web (IRMLeS 2010). Heraklion, Greece, May 2010.

  • Simon Jupp, James Eales, Simon Fischer, Jörg-Uwe Kietz, Rishi Ramgolam, Alan Williams, Robert Stevens, Carole Goble. e-LICO: Delivering Data Mining to the Life Science Community. Microsoft e-Science Workshop 2010, 11-13 October, Berkeley, CA.

  • Simon Jupp and Julie Klein. e-LICO an e-Laboratory for Interdisciplinary Collaborative Research in Data-mining. Intelligent Systems in Molecular Biology Poster and Demo. 2010. Boston, USA.

  • Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens, Adma Woznica, Alexandros Kalousis. Integration of Kidney and Urinary Pathway Data for Knowledge Intensive Data Mining. Demonstration, Data Integration in the Life Science (DILS  2010). Gothenburg, Sweden.

 

2009

  • Huyen Thi Thanh Do, Alexandros Kalousis, Adam Woznica, Melanie Hilario. Margin and Radius Based Multiple Kernel Learning. Proc. of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2009), Springer.

  • Huyen Thi Thanh Do, Alexandros Kalousis, Melanie Hilario. Feature Weighting Using Margin and Radius Based Error Bound Optimization in SVMs. Proc. of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2009), Springer.

  • Charalampos Doukas, Ilias Maglogiannis, Aristotle Chatziioannou. An open web services-based framework for data mining of biomedical image data. Information Technology and Applications in Biomedicine, 2009. ITAB 2009. 9th International Conference on 4-7 Nov. 2009. DOI:10.1109/ITAB.2009.5394403.

  • Melanie Hilario, Alexandros Kalousis, Phong Nguyen, Adam Woznica. A Data Mining Ontology for Algorithm Selection and Meta-Learning.  Proc of the ECML/PKDD09 Workshop on Third Generation Data Mining: Towards Service-oriented Knowledge Discovery (SoKD-09), Bled, Slovenia, September 2009, pp. 76-87. 

  • Jörg-Uwe Kietz, Floarea Serban, Abraham Bernstein and Simon Fischer: Towards Cooperative Planning of Data Mining Workflows,  Proc of the ECML/PKDD09 Workshop on Third Generation Data Mining: Towards Service-oriented Knowledge Discovery (SoKD-09), Bled, Slovenia, September 2009, pp. 1-12. 

  • K.Moutselos, I.Kanaris, A.Chatziioannou, I. Maglogiannis, F.N. Kolisis. KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. BMC Bioinformatics 10:324, 2009. DOI:10.1186/1471-2105-10-324.

  • Antonia Vlahou, Guenter Allmaier, Teresa Attwood, Erik Bongcam-Rudloff, Aris Charonis, Jorgen Frokiaer, Harald Mischak, Joost Schanstra, Goce Spasovski, EuroKUP. 2nd Combined Working Group and Management Committee Meeting of Urine and Kidney Proteomics COST Action 29-30 March 2009, Nafplio, Greece. Proteomics – Clinical Applications, Volume 3, Issue 9, Date: September 2009, pages 1017-1022. DOI:10.1002/prca.200900087